Information for 4-GVCHGGCAGGCAG (Motif 11)

A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G G T A C A G T C A C G T A T C G A G T C A G T C C A G T A C T G A G C T A G T C
p-value:1e-6
log p-value:-1.497e+01
Information Content per bp:1.854
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.05%
Number of Background Sequences with motif20.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.0 +/- 19.7bp
Average Position of motif in Background50.8 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GVCHGGCAGGCAG
TGGCAGNCTGCCAG
 A C G T A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GVCHGGCAGGCAG
GSCTGTCACTCA-
 A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GVCHGGCAGGCAG
-SCTGTCAVTCAV
 A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GVCHGGCAGGCAG
AGGTGNCAGACAG
 A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GVCHGGCAGGCAG
NACCGGAAGT---
 A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G
T C G A T C G A T A G C G T A C T C A G T A C G C G T A C G T A T C A G A G C T A C G T A C G T A C G T

ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GVCHGGCAGGCAG
AACCGGAAGT---
 A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G
T C G A C T G A T A G C T G A C T C A G T C A G C G T A C G T A T C A G A G C T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GVCHGGCAGGCAG---
NGTAGGTTGGCATNNN
 A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GVCHGGCAGGCAG
-NCTGTCAATCAN
 A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GVCHGGCAGGCAG
-----CCAGACAG
 A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GVCHGGCAGGCAG---
-SCAGYCADGCATGAC
 A C T G T C G A G T A C G C T A A C T G A C T G A T G C C G T A A C T G A C T G A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C