Information for 4-ACCAGTCTGT (Motif 9)

G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T
Reverse Opposite:
C T G A A G T C C G T A A C T G T G C A A G T C C G A T C T A G C T A G C G A T
p-value:1e-9
log p-value:-2.290e+01
Information Content per bp:1.844
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif100.5
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets58.3 +/- 23.8bp
Average Position of motif in Background49.1 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ACCAGTCTGT
VBSYGTCTGG
 G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:ACCAGTCTGT
--TWGTCTGV
 G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:ACCAGTCTGT
--CTGTCTGG
 G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:forward strand
Alignment:ACCAGTCTGT-
-----GCTGTG
 G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ACCAGTCTGT-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:ACCAGTCTGT-----
---TGTCTGDCACCT
 G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ACCAGTCTGT-----
--CTGTCTGTCACCT
 G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ACCAGTCTGT--
VAGRACAKNCTGTBC
 A C G T A C G T A C G T G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

NFYB/MA0502.1/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------ACCAGTCTGT
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:ACCAGTCTGT---
---GGTCTGGCAT
 G C T A A G T C G A T C C G T A A C T G A C G T A G T C C G A T A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T