Information for 10-CTGCTGCCAT (Motif 15)

G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T
Reverse Opposite:
C G T A G A C T A T C G T A C G T G A C T G C A C A T G A T G C T C G A C T A G
p-value:1e-8
log p-value:-1.969e+01
Information Content per bp:1.657
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif6.70%
Number of Background Sequences with motif1376.3
Percentage of Background Sequences with motif2.84%
Average Position of motif in Targets42.4 +/- 21.8bp
Average Position of motif in Background50.1 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTGCTGCCAT----
--GCCGCCATCTTG
 G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTGCTGCCAT----
--GCNGCCATCTTG
 G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGCCAT-
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T A C G T G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CTGCTGCCAT
AGATGCTRCTRCCHT
 A C G T A C G T A C G T A C G T A C G T G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGCCAT
NNAGCAGCTGCT--
 A C G T A C G T A C G T A C G T G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTGCTGCCAT
CAGCAGCTGN---
 A C G T A C G T A C G T G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGCCAT-
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A C G T G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTGCTGCCAT
ANCAGCTG----
 A C G T A C G T G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGCCAT
CCCCCTGCTGTG--
 A C G T A C G T A C G T A C G T G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTGCTGCCAT
AGCAGCTGCT--
 A C G T A C G T G A T C A G C T T A C G G T A C A C G T A C T G A T G C T A G C C T G A G C A T
T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T