Information for 21-AAATGAATGGCAG (Motif 33)

C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G
Reverse Opposite:
A G T C A C G T A T C G A G T C G T A C C G T A A C G T A C G T A G T C C G T A C G A T C G A T A C G T
p-value:1e-8
log p-value:-2.003e+01
Information Content per bp:1.839
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif41.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets41.6 +/- 28.4bp
Average Position of motif in Background42.8 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AAATGAATGGCAG
NNNTATTGAATTGNNN
 A C G T A C G T A C G T C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AAATGAATGGCAG
ACTATGAATGAATGAT--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AAATGAATGGCAG
NNTNTCATGAATGT---
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAATGAATGGCAG
ACATCAAAGGNA-
 C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AAATGAATGGCAG-
--BTGABTGACAGS
 C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G A C G T
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AAATGAATGGCAG-
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAATGAATGGCAG
HNRAATCAAT-----
 A C G T A C G T C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAATGAATGGCAG
AAAGATCAAAGGAA-
 A C G T A C G T C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AAATGAATGGCAG-
--NTGATTGACAGN
 C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G A C G T
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAATGAATGGCAG--
GAAAAAATTGCAAGG
 C G T A C G T A C G T A A C G T T C A G C G T A C G T A G C A T A C T G A C T G A T G C C G T A C T A G A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G