Information for 19-CCATTATTAATCA (Motif 30)

A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A
Reverse Opposite:
C G A T A C T G C T G A A C G T A C G T C G T A C G T A A C G T C T G A C G T A C G A T A C T G A C T G
p-value:1e-9
log p-value:-2.078e+01
Information Content per bp:1.861
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.7 +/- 24.0bp
Average Position of motif in Background39.9 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CCATTATTAATCA
---TCATCAATCA
 A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A
A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Arid3b/MA0601.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CCATTATTAATCA-
---ATATTAATTAA
 A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A A C G T
A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CCATTATTAATCA
--GCCATAAATCA
 A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A
A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PH0150.1_Pou4f3/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCATTATTAATCA----
-AGTTATTAATGAGGTC
 A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C

PH0038.1_Hlx/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCATTATTAATCA--
CCATAATTAATTACA
 A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A A C G T A C G T
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A

PB0144.1_Lef1_2/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCATTATTAATCA----
-GAAGATCAATCACTTA
 A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

PBX1/MA0070.1/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCATTATTAATCA--
---CCATCAATCAAA
 A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

POU4F3/MA0791.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCATTATTAATCA-
ATGCATAATTAATGAG
 A C G T A C G T A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCATTATTAATCA-
--GYCATCMATCAT
 A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A A C G T
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCATTATTAATCA
-GGCCATAAATCA
 A G T C A G T C C G T A C G A T A G C T G T C A A C G T C G A T C G T A C G T A A G C T A G T C C G T A
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A