Information for 9-CCCAGCAAGGGCG (Motif 16)

A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G
Reverse Opposite:
A G T C A T C G A G T C A G T C A G T C A C G T A C G T A C T G A G T C A C G T A C T G C T A G A C T G
p-value:1e-10
log p-value:-2.307e+01
Information Content per bp:1.877
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets71.0 +/- 15.9bp
Average Position of motif in Background40.7 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CCCAGCAAGGGCG
CACAGCAGGGGG-
 A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCAAGGGCG-
DCHCAGCAGGRGGCC
 A C G T A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAAGGGCG
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCAAGGGCG
DCTCAGCAGG----
 A C G T A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAAGGGCG
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCCAGCAAGGGCG-
CACAGCGGGGGGTC
 A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCAAGGGCG-
NCGCAGCGGGGGGTC
 A C G T A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAAGGGCG
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCAAGGGCG
TGCCCAGNHW-----
 A C G T A C G T A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCAAGGGCG-
NCNCAGCGGGGGGTC
 A C G T A G T C A G T C A G T C C G T A C T A G A G T C G T C A C G T A A C T G A C T G A C T G T A G C T C A G A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C