Motif 18

Information for 9-ATGTCAATAT (Motif 18)

Reverse Opposite:

p-value:	1e-9
log p-value:	-2.145e+01
Information Content per bp:	1.665
Number of Target Sequences with motif	33.0
Percentage of Target Sequences with motif	4.03%
Number of Background Sequences with motif	528.7
Percentage of Background Sequences with motif	1.11%
Average Position of motif in Targets	57.1 +/- 23.2bp
Average Position of motif in Background	50.8 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)	1.1
Multiplicity (# of sites on avg that occur together)	1.06
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

FOXB1/MA0845.1/Jaspar

Match Rank:	1
Score:	0.86
Offset:	-1
Orientation:	forward strand
Alignment:	-ATGTCAATAT TATGTAAATAT

FOXC1/MA0032.2/Jaspar

Match Rank:	2
Score:	0.80
Offset:	-1
Orientation:	forward strand
Alignment:	-ATGTCAATAT TATGTAAATAT

MEIS3/MA0775.1/Jaspar

Match Rank:	3
Score:	0.76
Offset:	-1
Orientation:	reverse strand
Alignment:	-ATGTCAATAT CCTGTCAA---

MEIS1/MA0498.2/Jaspar

Match Rank:	4
Score:	0.74
Offset:	0
Orientation:	reverse strand
Alignment:	ATGTCAATAT NTGTCAN---

PH0169.1_Tgif1/Jaspar

Match Rank:	5
Score:	0.73
Offset:	-6
Orientation:	reverse strand
Alignment:	------ATGTCAATAT- NNNCAGCTGTCAATATN

MEIS2/MA0774.1/Jaspar

Match Rank:	6
Score:	0.72
Offset:	-1
Orientation:	reverse strand
Alignment:	-ATGTCAATAT GCTGTCAA---

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:	7
Score:	0.72
Offset:	-3
Orientation:	reverse strand
Alignment:	---ATGTCAATAT-- NCWRWGTAAACANSV

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:	8
Score:	0.71
Offset:	-1
Orientation:	reverse strand
Alignment:	-ATGTCAATAT RHTGWCAR---

PH0141.1_Pknox2/Jaspar

Match Rank:	9
Score:	0.71
Offset:	-6
Orientation:	forward strand
Alignment:	------ATGTCAATAT AAGCACCTGTCAATAT

PH0104.1_Meis2/Jaspar

Match Rank:	10
Score:	0.71
Offset:	-6
Orientation:	forward strand
Alignment:	------ATGTCAATAT AAAGACCTGTCAATAC