Information for 7-CCGSCGTCTCCATGGC (Motif 8)

T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C
Reverse Opposite:
C T A G G T A C A T G C G T C A G A C T C T A G C T A G G T C A A T C G T G C A A T G C C T A G A T C G A G T C C A T G A T C G
p-value:1e-11
log p-value:-2.712e+01
Information Content per bp:1.672
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.71%
Number of Background Sequences with motif48.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets48.7 +/- 23.3bp
Average Position of motif in Background54.9 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CCGSCGTCTCCATGGC--
----NGTTGCCATGGCAA
 T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CCGSCGTCTCCATGGC---
-----GTTGCCATGGCAAC
 T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CCGSCGTCTCCATGGC----
-----GTTGCCATGGCAACM
 T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCGSCGTCTCCATGGC-
NTNNCGTATCCAAGTNN
 T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCGSCGTCTCCATGGC---
---CGGTTGCCATGGCAAC
 T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX3/MA0798.1/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CCGSCGTCTCCATGGC----
----CGTTGCCATGGCAACN
 T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCGSCGTCTCCATGGC--
----GGTTGCCATGGCAA
 T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CCGSCGTCTCCATGGC----
----CGTTGCCATGGCAACN
 T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

PB0158.1_Rfx3_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCGSCGTCTCCATGGC-----
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

RFX2/MA0600.2/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCGSCGTCTCCATGGC----
----CGTTGCCATGGCAACG
 T A G C G A T C C T A G T A G C G A T C A T C G A C G T A T G C A C G T A G T C A G T C C G T A A C G T A T C G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G