Information for 12-GTAAATCATGTTT (Motif 28)

A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T
Reverse Opposite:
C G T A C T G A G T C A A G T C C G T A C G A T A C T G C G T A A C G T A C G T G A C T G T C A G T A C
p-value:1e-9
log p-value:-2.198e+01
Information Content per bp:1.838
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.9 +/- 24.5bp
Average Position of motif in Background45.5 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTAAATCATGTTT
GGCCATAAATCAC----
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GTAAATCATGTTT
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Gfi1/MA0038.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTAAATCATGTTT
-CAAATCACTG--
 A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GTAAATCATGTTT
GGCCATAAATCA-----
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GTAAATCATGTTT
GGCCATAAATCA-----
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T A C G T

PB0176.1_Sox5_2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTAAATCATGTTT
NNCTNAATTATGANN
 A C G T A C G T A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GTAAATCATGTTT
GCCATAAATCA-----
 A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTAAATCATGTTT
-CCAATCAA----
 A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GTAAATCATGTTT-
--GKVTCADRTTWC
 A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T A C G T
A C G T A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GTAAATCATGTTT
NGYCATAAAWCH-----
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G A T C T A G A C G T A G C T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T A C G T A C G T A C G T