Information for 15-GGTCAAAGTC (Motif 12)

C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C
Reverse Opposite:
A C T G C T G A A T G C C G A T A C G T A C G T T A C G T G C A G T A C A G T C
p-value:1e-12
log p-value:-2.781e+01
Information Content per bp:1.840
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.48%
Number of Background Sequences with motif118.4
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets34.5 +/- 21.5bp
Average Position of motif in Background46.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTC----
GGGGTCAAAGTCCAAT
 A C G T A C G T C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GGTCAAAGTC-
AGGTCAAGGTCA
 A C G T C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GGTCAAAGTC-
AGGTCAAGGTCA
 A C G T C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GGTCAAAGTC--
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GGTCAAAGTC--
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGTCAAAGTC
AGGTCA-----
 A C G T C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTC--
GGGGTCAAAGGTCA
 A C G T A C G T C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGTCAAAGTC------
GGCAAAAGTCCAATAA
 C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTC---
AAGTTCAAGGTCAGC
 A C G T A C G T C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C A C G T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Rxra/MA0512.2/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGTC--
GGGGTCAAAGGTCA
 A C G T A C G T C T A G A C T G A C G T A G T C C G T A C G T A C G T A A T C G A G C T T G A C A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A