Information for 24-GTAATAAGAATCC (Motif 40)

A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C G T C G T A A G T C
p-value:1e-5
log p-value:-1.231e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets23.0 +/- 19.8bp
Average Position of motif in Background46.7 +/- 14.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0046.1_Hoxa10/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GTAATAAGAATCC
TAGGTAATAAAATTCA
 A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

HOXA10/MA0899.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTAATAAGAATCC
GGTAATAAAAA---
 A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GTAATAAGAATCC
AAAGGTAATAAAATTT-
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAATCC
GTCATAAAAN---
 A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTAATAAGAATCC
TAAGGTAATAAAATTA-
 A C G T A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A A C G T

GATA2/MA0036.2/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTAATAAGAATCC
NCAGATAAGAANNN
 A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
C G T A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A C G T A G A C T G A T C G C A T

LBX1/MA0618.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAATCC
TTAATTAG-----
 A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTAATAAGAATCC
AGAGCCATAAAATTCG
 A C G T A C G T A C G T A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAATCC
GCAATAAAA----
 A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTAATAAGAATCC
GCAATAAAAA---
 A C T G A C G T C G T A C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C G T A G T C A G T C
T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T