Information for 8-YMCTGCAATAAAA (Motif 15)

G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A
Reverse Opposite:
A C G T A G C T A C G T A G C T C T G A A C G T G C A T T C A G A G T C C G T A A C T G A C T G C T A G
p-value:1e-11
log p-value:-2.587e+01
Information Content per bp:1.709
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif11.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets50.6 +/- 29.4bp
Average Position of motif in Background52.8 +/- 14.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:YMCTGCAATAAAA
--AAGCCATAAAA
 G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.76
Offset:4
Orientation:forward strand
Alignment:YMCTGCAATAAAA
----GCAATAAAA
 G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A
A C G T A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.75
Offset:4
Orientation:forward strand
Alignment:YMCTGCAATAAAA-
----GTCATAAAAN
 G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A A C G T
A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.75
Offset:3
Orientation:forward strand
Alignment:YMCTGCAATAAAA-
---GGTAATAAAAA
 G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A A C G T
A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.74
Offset:4
Orientation:forward strand
Alignment:YMCTGCAATAAAA-
----GCAATAAAAA
 G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A A C G T
A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.71
Offset:4
Orientation:forward strand
Alignment:YMCTGCAATAAAA-
----CCAATAAAAA
 G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A A C G T
A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.71
Offset:4
Orientation:forward strand
Alignment:YMCTGCAATAAAA-
----CCAATAAAAA
 G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A A C G T
A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0056.1_Hoxa9/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:YMCTGCAATAAAA-----
-ACGGCCATAAAATTAAT
 G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:YMCTGCAATAAAA---
AAAGGTAATAAAATTT
 G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.70
Offset:4
Orientation:forward strand
Alignment:YMCTGCAATAAAA-
----CCAATAAAAC
 G A T C G T A C A G T C C G A T C T A G A G T C C G T A G T C A A G C T T C G A C G T A C T G A T G C A A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C