Information for 5-TTGGYACAGCWAW (Motif 11)

C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T
Reverse Opposite:
G C T A A G C T C G A T T A C G A G T C C G A T T C A G A C G T C T G A A T G C G T A C C G T A C G T A
p-value:1e-11
log p-value:-2.748e+01
Information Content per bp:1.711
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif60.1
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets48.8 +/- 28.3bp
Average Position of motif in Background51.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTGGYACAGCWAW
NNTTGGCANN-----
 A C G T A C G T C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TTGGYACAGCWAW
GGTTGCCATGGCAA-
 A C G T A C G T C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTGGYACAGCWAW-
ATTTGCATAACAATG
 A C G T C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTGGYACAGCWAW
GGTTGGCAT------
 A C G T A C G T C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTGGYACAGCWAW
CTTGGCAA------
 A C G T C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTGGYACAGCWAW
NTTGGCANN-----
 A C G T C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

RFX5/MA0510.2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TTGGYACAGCWAW-
NGTTGCCATGGCAACG
 A C G T A C G T C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T A C G T
A T G C C T A G A C G T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T C G A G A T C T A C G

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTGGYACAGCWAW
NGTTGCCATGGCAA-
 A C G T A C G T C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTGGYACAGCWAW
ATTTGCATA-----
 A C G T C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------TTGGYACAGCWAW
NGTAGGTTGGCATNNN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C T G A T C G A G C T C G T A A G T C C G T A C T A G A G T C C G T A C T G A C G A T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T A C G T