Information for 6-GGAGCCAAAC (Motif 26)

A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C G T A C T G A C T G A G T C A C G T A G T C A G T C
p-value:1e-8
log p-value:-1.918e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.0 +/- 24.3bp
Average Position of motif in Background40.5 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F1/MA0024.3/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GGAGCCAAAC
TTTGGCGCCAAA-
 A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C
G C A T C G A T C G A T T A C G A T C G A G T C A T C G T A G C A G T C G T C A G C T A C G T A A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGAGCCAAAC--
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGAGCCAAAC
CGTGCCAAG-
 A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGAGCCAAAC--
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C A C G T A C G T
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCCAAAC
CGGAGC-----
 A C G T A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GGAGCCAAAC
--TGCCAA--
 A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGAGCCAAAC-
ACTAGCCAATCA
 A C G T A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGAGCCAAAC
GGTGCCAAGT
 A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGAGCCAAAC-
AGGTGHCAGACA
 A C G T A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGAGCCAAAC--
--AGCCAATCGG
 A C T G A C T G C G T A A C T G A G T C A G T C C G T A C G T A C G T A A G T C A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G