Information for 1-AKGCMATAAA (Motif 1)

T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A C G T A C T G C T A G A G T C G T A C A G C T
p-value:1e-40
log p-value:-9.299e+01
Information Content per bp:1.796
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif13.69%
Number of Background Sequences with motif1196.4
Percentage of Background Sequences with motif2.45%
Average Position of motif in Targets50.7 +/- 23.1bp
Average Position of motif in Background50.5 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:AKGCMATAAA-
AAGCCATAAAA
 T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.94
Offset:2
Orientation:forward strand
Alignment:AKGCMATAAA-
--GCAATAAAA
 T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.93
Offset:2
Orientation:forward strand
Alignment:AKGCMATAAA--
--GTCATAAAAN
 T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--AKGCMATAAA----
AAAGGTAATAAAATTT
 A C G T A C G T T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.91
Offset:1
Orientation:forward strand
Alignment:AKGCMATAAA--
-GGTAATAAAAA
 T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.90
Offset:1
Orientation:forward strand
Alignment:AKGCMATAAA---
-NGYCATAAAWCH
 T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-AKGCMATAAA-----
AGAGCCATAAAATTCG
 A C G T T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PH0012.1_Cdx1/Jaspar

Match Rank:8
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--AKGCMATAAA----
TAAGGTAATAAAATTA
 A C G T A C G T T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

Hoxd9/MA0913.1/Jaspar

Match Rank:9
Score:0.86
Offset:2
Orientation:forward strand
Alignment:AKGCMATAAA--
--GCAATAAAAA
 T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A C G T
A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

PH0046.1_Hoxa10/Jaspar

Match Rank:10
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-AKGCMATAAA-----
TAGGTAATAAAATTCA
 A C G T T C G A C A T G C T A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A