Information for 4-GTCTGHGCAACCTGAC (Motif 6)

A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C
Reverse Opposite:
A C T G C A G T A T G C C G T A A T C G C T A G A G C T A C G T C T A G A G T C C A G T G T A C C G T A C T A G G T C A T A G C
p-value:1e-9
log p-value:-2.128e+01
Information Content per bp:1.753
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif2.35%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets29.5 +/- 13.3bp
Average Position of motif in Background77.9 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GTCTGHGCAACCTGAC------
-----CAAATCCAGACATCACA
 A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GTCTGHGCAACCTGAC--
------GWAAYHTGABMC
 A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.53
Offset:10
Orientation:reverse strand
Alignment:GTCTGHGCAACCTGAC--
----------CCAGACAG
 A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GTCTGHGCAACCTGAC-
-------AAACCACANN
 A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.52
Offset:10
Orientation:reverse strand
Alignment:GTCTGHGCAACCTGAC----
----------CCAGACRSVB
 A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:6
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GTCTGHGCAACCTGAC--
------GWAAYHTGAKMC
 A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.51
Offset:6
Orientation:forward strand
Alignment:GTCTGHGCAACCTGAC
------NAAACCACAG
 A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:GTCTGHGCAACCTGAC--
-------AAACCACAGAN
 A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.50
Offset:6
Orientation:forward strand
Alignment:GTCTGHGCAACCTGAC--
------NWAACCACADNN
 A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:GTCTGHGCAACCTGAC-
-------ATGCCAGACN
 A T C G A C G T A G T C C G A T A C T G G C T A T C A G A G T C C G T A C T G A A G T C A T G C C G A T A T C G G C T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C