Information for 9-TTTTCTTTAWGGT (Motif 10)

A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T
Reverse Opposite:
C T G A A G T C A G T C C G T A C G A T C G T A C G T A C G T A A C T G G T C A C G T A C G T A C G T A
p-value:1e-9
log p-value:-2.257e+01
Information Content per bp:1.832
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif13.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets41.0 +/- 25.6bp
Average Position of motif in Background55.8 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TTTTCTTTAWGGT-
--DGWTTTATGRCN
 A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTCTTTAWGGT
NNNNTTTTTTTTTNAAC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTTTCTTTAWGGT
NNNNTTTGTTTACNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTTTCTTTAWGGT-
TTTTTTTTCNNGTN
 A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T A C G T
G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

PB0093.1_Zfp105_1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTTCTTTAWGGT
NTNTTGTTGTTTGTN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T
G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TTTTCTTTAWGGT-
--TGATTTATGGCC
 A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Foxj3/MA0851.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTTTCTTTAWGGT--
NNNTTTGTTTACNTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T A C G T A C G T
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTTTCTTTAWGGT--
NNNTTTGTTTACNTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T A C G T A C G T
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTTTCTTTAWGGT
--TGATTTATGGC
 A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TTTTCTTTAWGGT--
----TTTTATGGCTN
 A C G T A C G T A C G T A C G T G T A C A C G T C G A T A C G T C G T A C G A T C T A G C T A G G A C T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T