Information for 7-CGGCTCGCAG (Motif 15)

G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G
Reverse Opposite:
A T G C C A G T A C T G A T G C C A T G G T C A T C A G G T A C A T G C C T A G
p-value:1e-8
log p-value:-2.011e+01
Information Content per bp:1.747
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.42%
Number of Background Sequences with motif236.9
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets44.1 +/- 25.2bp
Average Position of motif in Background48.0 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGGCTCGCAG
TBGCACGCAA
 G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGGCTCGCAG
-NGCTN----
 G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CGGCTCGCAG---
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGGCTCGCAG
-GGTTGGCAT
 G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CGGCTCGCAG--
CTGTCTGTCACCT
 A C G T G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGGCTCGCAG--
TGTCTGDCACCT
 G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CGGCTCGCAG
---CACGCA-
 G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGGCTCGCAG-----
-GCCGCGCAGTGCGT
 G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGGCTCGCAG
-GGCGCGCT-
 G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGGCTCGCAG
--GCTCCG--
 G A T C T A C G A C T G A G T C A C G T G T A C T A C G G T A C G T C A A T C G
A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T