Information for 10-TGCATGAAAAGGTTGA (Motif 9)

G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A
Reverse Opposite:
C G A T G T A C C G T A G T C A T A G C G T A C A C G T A C G T C G A T C A G T A T G C G C T A C G A T C T A G A G T C C G T A
p-value:1e-12
log p-value:-2.805e+01
Information Content per bp:1.734
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.1 +/- 21.8bp
Average Position of motif in Background55.6 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:TGCATGAAAAGGTTGA
--------AAGCTTG-
 G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGCATGAAAAGGTTGA
---ANGNAAAGGTCA-
 G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A
A C G T A C G T A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---TGCATGAAAAGGTTGA
ATTTGCATAACAAAG----
 A C G T A C G T A C G T G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:4
Score:0.50
Offset:3
Orientation:forward strand
Alignment:TGCATGAAAAGGTTGA---
---TCGCGAAGGTTGTACT
 G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:5
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TGCATGAAAAGGTTGA-----
-NANTGGAAAAANTGAGTCAN
 G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

POL002.1_INR/Jaspar

Match Rank:6
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:TGCATGAAAAGGTTGA
--------NNNANTGA
 G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.49
Offset:2
Orientation:forward strand
Alignment:TGCATGAAAAGGTTGA
--TATGCWAATBAV--
 G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A
A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.48
Offset:1
Orientation:forward strand
Alignment:TGCATGAAAAGGTTGA
-CCAGGAACAG-----
 G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---TGCATGAAAAGGTTGA
ATTTGCATAACAATG----
 A C G T A C G T A C G T G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T A C G T A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:TGCATGAAAAGGTTGA---
---NAGAACAGNCTGTNCT
 G A C T C T A G A G T C C G T A C A G T A T C G G T C A C G T A G T C A C G T A A C T G A T C G A C G T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T