Information for 8-RCAGCARCAATTTCTT (Motif 6)

T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T
Reverse Opposite:
T G C A C G T A T A C G G C T A T G C A C G T A C G A T A C G T A C T G G A T C A C G T A C T G G T A C C G A T A C T G A G T C
p-value:1e-12
log p-value:-2.927e+01
Information Content per bp:1.685
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.58%
Number of Background Sequences with motif31.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets50.4 +/- 25.7bp
Average Position of motif in Background52.0 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0008.1_Barx2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:RCAGCARCAATTTCTT-
-NANAANTAATTANTTA
 T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T A C G T
A C G T G A C T C T G A G A C T G T C A T C G A A G T C G A C T G T C A G C T A C A G T C A G T C T G A T G A C A G C T C G A T C G T A

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:RCAGCARCAATTTCTT-
TNCNNAACAATTTTTNC
 T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

PH0024.1_Dlx5/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RCAGCARCAATTTCTT-
-NANNGNTAATTACCNN
 T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T A C G T
A C G T A T G C T C G A A C T G T G C A T C A G A T G C G A C T G T C A C G T A G A C T C A G T C T G A A G T C A G T C A T G C T A G C

PH0062.1_Hoxb7/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RCAGCARCAATTTCTT-
-TNNCATTAATTANTNC
 T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T A C G T
A C G T A G C T C G A T T A C G G T A C T G C A A C G T G A C T G T C A G C T A C G A T C A G T C T G A T G A C A C G T T C G A T A G C

PH0007.1_Barx1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RCAGCARCAATTTCTT-
-ATNNACTAATTACTTT
 T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T A C G T
A C G T C G T A G C A T C A G T G A T C T C G A T A G C G A C T T G C A G T C A A C G T A C G T C T G A A T G C A G C T C A G T C A G T

HOXA5/MA0158.1/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:RCAGCARCAATTTCTT
----CACTAATT----
 T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PH0029.1_En2/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:RCAGCARCAATTTCTT---
--TGCACTAATTAGTGGAA
 T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T C A G G T A C T G C A G A T C G A C T G C T A C G T A C G A T C A G T C T G A C T A G A G C T A T C G T C A G G C T A G C A T

PH0028.1_En1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:RCAGCARCAATTTCTT---
---GNATTAATTAGTTNNC
 T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

PH0033.1_Gbx1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RCAGCARCAATTTCTT---
--TNCACTAATTAGTNNNN
 T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T G C A T G A C T G C A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A G C T A C T G T A C G G A T C C G T A

PH0110.1_Nkx1-2/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RCAGCARCAATTTCTT---
--TGNACTAATTAGTGNAN
 T C A G A G T C C G T A A C T G A G T C T G C A C T A G T G A C C G T A C G T A C G A T A C G T C A G T A T G C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T T A C G G A T C T G C A G A T C G A C T G T C A C G T A C G A T A C G T C T G A C T A G A G C T A C T G T G A C G T C A G T A C