Information for 12-GACTAAWTCC (Motif 41)

A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C
Reverse Opposite:
C T A G A C T G G T C A C G A T A C G T A C G T C G T A A C T G A C G T A G T C
p-value:1e-6
log p-value:-1.578e+01
Information Content per bp:1.901
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif24.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets59.6 +/- 26.6bp
Average Position of motif in Background44.1 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GACTAAWTCC
ACCGTGACTAATTNN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GACTAAWTCC-
---TAATCCCN
 A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C A C G T
A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GACTAAWTCC-
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GACTAAWTCC-
-GCTAATCCCC
 A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C A C G T
A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GACTAAWTCC----
GNNNATTAATCCCTNCN
 A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GACTAAWTCC
-CTTAATCCC
 A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C
A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

PH0130.1_Otx2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GACTAAWTCC----
GANNATTAATCCCTNNN
 A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GACTAAWTCC
--YTAATCCY
 A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C
A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

MF0010.1_Homeobox_class/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GACTAAWTCC
-AATAATT--
 A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C
A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GACTAAWTCC-
NANAGGGATTAATTATN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A C G T C G T A C G T A C G T A A C G T A G T C A G T C A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C