Information for 5-ACCTTWTSACCTC (Motif 11)

C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C
Reverse Opposite:
A T C G C T G A A C T G A T C G A G C T A T C G G T C A C G T A C T G A C G T A C T A G A C T G A G C T
p-value:1e-11
log p-value:-2.745e+01
Information Content per bp:1.761
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.3 +/- 23.0bp
Average Position of motif in Background72.6 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARA/MA0729.1/Jaspar

Match Rank:1
Score:0.81
Offset:-5
Orientation:reverse strand
Alignment:-----ACCTTWTSACCTC
CATTGACCTTTTGACCTC
 A C G T A C G T A C G T A C G T A C G T C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C

Rarg/MA0859.1/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---ACCTTWTSACCTC
TTGACCTTTTGACCTT
 A C G T A C G T A C G T C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--ACCTTWTSACCTC
TGACCTTTTGACCTC
 A C G T A C G T C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C
A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

Rarb/MA0857.1/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--ACCTTWTSACCTC-
TGACCTTTTGACCTTT
 A C G T A C G T C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C A C G T
G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:ACCTTWTSACCTC--
WCATTTTGKCCTCYT
 C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C A C G T A C G T
C G T A G A T C C T G A A C G T A C G T A C G T C A G T C T A G A C G T G T A C G T A C G A C T A G T C G A T C A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ACCTTWTSACCTC
--ATTAACACCT-
 C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C
A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ACCTTWTSACCTC--
--CNNTTGACCTTTG
 C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C A C G T A C G T
A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

HLTF/MA0109.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ACCTTWTSACCTC
AACCTTATAT----
 A C G T C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:ACCTTWTSACCTC-
------TGACCYCT
 C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:ACCTTWTSACCTC-
------TGACCTYA
 C T G A G T A C A G T C A C G T A G C T C G A T A C G T A T G C C T G A A T G C A G T C A G C T A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A