Information for 7-ACAATGGAGGAAH (Motif 8)

C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
Reverse Opposite:
C A T G A C G T A C G T A G T C A G T C A C G T A G T C G T A C C G T A A C G T A C G T A C T G A C G T
p-value:1e-10
log p-value:-2.367e+01
Information Content per bp:1.843
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets41.9 +/- 24.0bp
Average Position of motif in Background33.8 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGAGGAAH
AACAAAGG------
 A C G T C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ACAATGGAGGAAH
RACAAWGG------
 A C G T C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----ACAATGGAGGAAH
CTCACACAATGGCGC---
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGAGGAAH
VRAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ACAATGGAGGAAH
GAACAATGGN-----
 A C G T A C G T C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGAGGAAH
RNAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ACAATGGAGGAAH
RAACAATGGN-----
 A C G T A C G T C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGAGGAAH
VRRACAAWGG------
 A C G T A C G T A C G T C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ACAATGGAGGAAH
GAACAATGG------
 A C G T A C G T C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ACAATGGAGGAAH
AAAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C G T A T G C A C G A T A C T G A C T G C G T A A C T G A C T G G T C A T C G A G A T C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T