Information for 4-TTTATGGTTTTAT (Motif 3)

C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T
Reverse Opposite:
C G T A A C G T C T G A C G T A C G T A C T G A A G T C G T A C C G T A C G A T T C G A C G T A C G T A
p-value:1e-17
log p-value:-3.966e+01
Information Content per bp:1.807
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.8 +/- 31.2bp
Average Position of motif in Background55.7 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTATGGTTTTAT
TTTTATGGCTN---
 A C G T C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATGGTTTTAT
NGANTTTTATGGCTCN--
 A C G T A C G T A C G T A C G T A C G T C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TTTATGGTTTTAT------
---NNANTTTTATTGGNNN
 C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTTATGGTTTTAT
TTTTATTGC-----
 A C G T C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:TTTATGGTTTTAT---
------NTTTTATTGG
 C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTTATGGTTTTAT
NTAATKGTTT---
 C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T A C G T A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTATGGTTTTAT-
NTTATTGATTTTTT
 C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T A C G T
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:TTTATGGTTTTAT----
-------TTTTATTRGN
 C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TTTATGGTTTTAT---
------NTTTTATGAC
 C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:TTTATGGTTTTAT----
-----DGWTTTATGRCN
 C G A T A C G T A G C T C G T A A C G T A C T G C T A G A G C T A C G T C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C