Information for 3-CGCCCTCTGGTGG (Motif 2)

A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G
Reverse Opposite:
A G T C A G T C C T G A T A G C G A T C C G T A A T C G C T G A C A T G A C T G A C T G G T A C T C A G
p-value:1e-27
log p-value:-6.403e+01
Information Content per bp:1.778
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.51%
Number of Background Sequences with motif164.5
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets51.4 +/- 28.3bp
Average Position of motif in Background49.7 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.93
Offset:-6
Orientation:forward strand
Alignment:------CGCCCTCTGGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CGCCCTCTGGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----CGCCCTCTGGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGCCCTCTGGTGG
-GCCATCTGTT--
 A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CGCCCTCTGGTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGCCCTCTGGTGG-
CACCCCCGGGGGGG
 A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G A C G T
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

PB0103.1_Zic3_1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGCCCTCTGGTGG--
CCCCCCCGGGGGGGT
 A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

PB0102.1_Zic2_1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCCCTCTGGTGG--
CCCCCCCGGGGGGGT
 A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G A C G T A C G T
A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G A T C G A C T G C A T G C A T G C A T G A T C G A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGCCCTCTGGTGG
-ACCATCTGTT--
 A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G
A C G T T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGCCCTCTGGTGG
NTGCCCANNGGTNA
 A C G T A G T C A C T G A G T C A G T C G T A C A G C T A T G C A C G T C T A G A T C G A G C T A C T G A C T G
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A