Information for 5-GRCTGTDAAG (Motif 3)

A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G
Reverse Opposite:
A G T C C G A T A C G T G A C T G T C A G T A C C G T A T C A G A G T C A T G C
p-value:1e-24
log p-value:-5.660e+01
Information Content per bp:1.677
Number of Target Sequences with motif97.0
Percentage of Target Sequences with motif13.66%
Number of Background Sequences with motif1808.3
Percentage of Background Sequences with motif4.02%
Average Position of motif in Targets48.3 +/- 25.9bp
Average Position of motif in Background50.9 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GRCTGTDAAG---
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C G T A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GRCTGTDAAG
-GCTGTCAA-
 A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GRCTGTDAAG---
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GRCTGTDAAG---
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GRCTGTDAAG
-CCTGTCAA-
 A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GRCTGTDAAG
--NTGTCAN-
 A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G
A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GRCTGTDAAG--
NGYCATAAAWCH
 A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GRCTGTDAAG
AAGGTGTKAA-
 A C G T A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GRCTGTDAAG--
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

TBX20/MA0689.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GRCTGTDAAG
TAGGTGTGAAG
 A C G T A T C G T C A G A G T C C G A T A C T G A C G T C T G A G T C A C G T A T C A G
C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G