Information for 13-GTCAGTCTTATTC (Motif 18)

A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
Reverse Opposite:
A C T G C G T A C G T A A G C T G T C A C G T A A C T G C G T A A G T C C G A T A C T G C G T A A T G C
p-value:1e-9
log p-value:-2.190e+01
Information Content per bp:1.840
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.3 +/- 24.7bp
Average Position of motif in Background51.1 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GTCAGTCTTATTC
SCTGTCAVTCAV----
 A C G T A C G T A C G T A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTCAGTCTTATTC
NCTGTCAATCAN----
 A C G T A C G T A C G T A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GTCAGTCTTATTC
GSCTGTCACTCA-----
 A C G T A C G T A C G T A C G T A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GTCAGTCTTATTC
NTGTCAN--------
 A C G T A C G T A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GTCAGTCTTATTC
-TGAGTCATTTC-
 A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
A C G T C G A T A C T G C G T A A T C G A C G T G T A C C G T A C A G T G C A T G A C T G A T C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTCAGTCTTATTC
TGTCTGDCACCT--
 A C G T A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GTCAGTCTTATTC
-TCAGTCTT----
 A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GTCAGTCTTATTC
CTGTCTGTCACCT--
 A C G T A C G T A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTCAGTCTTATTC
CCATCAATCAAA---
 A C G T A C G T A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T A C G T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTCAGTCTTATTC
CTTTCANTATGACTV
 A C G T A C G T A T C G A C G T A G T C C G T A C T A G A C G T A G T C C G A T A C G T C T G A A C G T A C G T T G A C
A T G C G A C T A G C T A G C T A G T C G C T A C A G T C G A T G C T A A C G T A C T G G C T A T A G C G C A T T G A C