Information for 3-GTCGTTTAAAAGA (Motif 7)

A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A
Reverse Opposite:
A C G T A G T C A C G T A C G T A C G T A C G T C G T A C G T A C G T A G T A C A T C G T C G A A G T C
p-value:1e-10
log p-value:-2.458e+01
Information Content per bp:1.831
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.7 +/- 17.6bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0179.1_Sp100_2/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GTCGTTTAAAAGA
TCCGTCGCTTAAAAG-
 A C G T A C G T A C G T A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A
A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GTCGTTTAAAAGA
-GNCTATAAAAGG
 A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

BARHL2/MA0635.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTCGTTTAAAAGA
ANCGTTTANN---
 A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GTCGTTTAAAAGA
--NATTCAAAT--
 A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A
A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GTCGTTTAAAAGA-----
---GTATAAAAGGCGGGG
 A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GTCGTTTAAAAGA-----
---GTATAAAAGGCGGGG
 A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCGTTTAAAAGA
-CGGTTTCAAA--
 A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GTCGTTTAAAAGA
--NTTTTACGAGN
 A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A
A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GTCGTTTAAAAGA-
----TTTAATTGCN
 A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GTCGTTTAAAAGA
---TTTTATTRGN
 A C T G A C G T A T G C A C T G A C G T A C G T A C G T C G T A G T C A C G T A G T C A C T A G T C G A
A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A