Information for 3-AGCACCACCA (Motif 3)

C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A
Reverse Opposite:
A G C T C T A G A T C G G A C T A C T G A T C G G A C T A C T G A T G C A G C T
p-value:1e-11
log p-value:-2.565e+01
Information Content per bp:1.831
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif189.6
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets44.2 +/- 23.1bp
Average Position of motif in Background52.5 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AGCACCACCA----
CATAAGACCACCATTAC
 A C G T A C G T A C G T C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A A C G T A C G T A C G T A C G T
A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AGCACCACCA
ADGGYAGYAGCATCT
 A C G T A C G T A C G T A C G T A C G T C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

ZBTB7C/MA0695.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGCACCACCA--
GCGACCACCGAA
 C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A A C G T A C G T
C T A G T A G C C T A G G T C A G T A C A G T C G T C A G T A C G A T C T C A G G T C A T G C A

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGCACCACCA--------
GAAGTANCACGAATNMRAGT
 A C G T A C G T C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

ZNF354C/MA0130.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGCACCACCA
--ATCCAC--
 C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A
A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCACCACCA---
-GGACCACCCACG
 C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A A C G T A C G T A C G T
A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCACCACCA----
NRGCCCCRCCCHBNN
 A C G T C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A A C G T A C G T A C G T A C G T
G A C T T C A G C T A G A G T C A G T C G T A C A G T C C T G A A G T C A G T C A G T C G A C T A G T C A C T G A T G C

ZBTB7B/MA0694.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGCACCACCA--
GCGACCACCGAA
 C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A A C G T A C G T
C T A G T A G C C T A G G T C A T G A C A T G C G T C A G T A C A G T C T C A G G C T A G T C A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGCACCACCA--
NWAACCACADNN
 C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

PB0117.1_Eomes_2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGCACCACCA----
NNGGCGACACCTCNNN
 A C G T A C G T C T G A A T C G G T A C C T G A T A G C A G T C C T G A A T G C G A T C T C G A A C G T A C G T A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C