Information for 3-TTGGACTTTGGAC (Motif 5)

C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C
Reverse Opposite:
T A C G A C G T A G T C A T G C G T C A T C G A C G T A A C T G C G A T A G T C G T A C G T C A C G T A
p-value:1e-13
log p-value:-3.087e+01
Information Content per bp:1.655
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.55%
Number of Background Sequences with motif139.7
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets49.3 +/- 20.2bp
Average Position of motif in Background50.0 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGGAC----
-TGGACTTTGNNCTNTG
 C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGGAC---
-TGGACTTTGNNCTCN
 C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---TTGGACTTTGGAC
NNATTGGACTTTNGNN
 A C G T A C G T A C G T C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TTGGACTTTGGAC--
ATTGGACTTTGACCCC
 A C G T C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTGGACTTTGGAC
CTGACCTTTG---
 C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTGGACTTTGGAC---
TTGACCTTTTGACCTT
 C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C A C G T A C G T A C G T
C G A T A G C T T C A G T G C A T G A C G T A C A G C T G A C T G C A T A G C T T C A G T G C A T G A C A G T C A G C T A G C T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGGAC--
-TGACCTTTGCCCTA
 C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C A C G T A C G T
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGGAC---
-TGACCTTTGCCCTAN
 C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C A C G T A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

RXRG/MA0856.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGGAC--
-TGACCTTTGACCCC
 C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C A C G T A C G T
A C G T A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTGGACTTTGGAC--
-TGACCTTTGACCTC
 C G A T C A G T C A T G T C A G C G T A G T A C C G A T A G C T A C G T A T C G T C A G T C G A A T G C A C G T A C G T
A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C