Information for 11-TTTATATGCA (Motif 20)

A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A
Reverse Opposite:
C G A T C T A G T A G C G C T A C G A T G T C A G C A T G T C A G C T A T G C A
p-value:1e-8
log p-value:-1.906e+01
Information Content per bp:1.539
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif152.9
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets61.9 +/- 23.6bp
Average Position of motif in Background47.8 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TTTATATGCA-
-GHATATKCAT
 A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A A C G T
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTTATATGCA------
TNNATTATGCATANNTT
 A C G T A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTTATATGCA---
CTTTGTTATGCAAAT
 A C G T A C G T A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A A C G T A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTTATATGCA---
CATTGTTATGCAAAT
 A C G T A C G T A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A A C G T A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TTTATATGCA---
TTCATTTGCATAT
 A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A A C G T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTTATATGCA----
ANATTTTTGCAANTN
 A C G T A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A A C G T A C G T A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTATATGCA-----
TNTAATTTGCATANNN
 A C G T A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTTATATGCA---
CCATTGTATGCAAAT
 A C G T A C G T A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A A C G T A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------TTTATATGCA
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------TTTATATGCA
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T C G T A C A G T G C T A C G A T A T C G G A T C G C T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T