Information for 8-CAGACTTAWRTCT (Motif 17)

G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T
Reverse Opposite:
C G T A A C T G T C G A A G T C C G A T C G A T C T G A G C T A C T A G A C G T A G T C C G A T C A T G
p-value:1e-8
log p-value:-2.009e+01
Information Content per bp:1.647
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.32%
Number of Background Sequences with motif202.6
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets53.7 +/- 24.6bp
Average Position of motif in Background53.4 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTTAWRTCT
BCAGACWA------
 A C G T G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGACTTAWRTCT--
NAGATWNBNATCTNN
 G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T A C G T A C G T
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTTAWRTCT
CCAGACAG------
 A C G T G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTTAWRTCT
CCAGACRSVB----
 A C G T G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAGACTTAWRTCT-
NTGCCCTTGGGCGN
 G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CAGACTTAWRTCT
CAAATCCAGACATCACA--
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAGACTTAWRTCT
-GGCCATAAATCA
 G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CAGACTTAWRTCT-----
-NNNCTGATATCTCNNNN
 G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CAGACTTAWRTCT-
-GGCCATAAATCAC
 G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T A C G T
A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

NEUROG2/MA0669.1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CAGACTTAWRTCT
--AACATATGTC-
 G T A C C G T A A C T G T G C A A G T C C G A T G A C T G C T A G C T A T C A G A G C T A G T C C G A T
A C G T A C G T T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C A C G T