Information for 14-CGTAGTACGT (Motif 20)

T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T
Reverse Opposite:
T G C A A T G C A C T G A G C T T C G A A T G C A C G T C T G A A G T C A C T G
p-value:1e-8
log p-value:-2.042e+01
Information Content per bp:1.670
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.07%
Number of Background Sequences with motif578.1
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets63.0 +/- 23.3bp
Average Position of motif in Background55.0 +/- 41.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gmeb1/MA0615.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CGTAGTACGT------
NNNTNGTACGTAANNNN
 A C G T T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

PB0027.1_Gmeb1_1/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CGTAGTACGT------
NNNTNGTACGTAANNNN
 A C G T T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

GMEB2/MA0862.1/Jaspar

Match Rank:3
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CGTAGTACGT--
----TTACGTAA
 T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C A C T G A G C T G T C A T G C A

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CGTAGTACGT-
---BGCACGTA
 T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T A C G T
A C G T A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CGTAGTACGT--
--GGGTACGTGC
 T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T A C G T A C G T
A C G T A C G T C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CGTAGTACGT--
----GGACGTGC
 T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CGTAGTACGT--
----RTACGTGC
 T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C

Atf1/MA0604.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CGTAGTACGT---
-----TACGTCAT
 T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CGTAGTACGT----
ACTCCAAGTACTTGGAA
 A C G T A C G T A C G T T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

Crem/MA0609.1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CGTAGTACGT----
----TTACGTCATN
 T G A C A C T G G A C T T G C A A T C G A G C T C T G A G T A C T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G A C G T G T A C C G T A A G C T G T C A