Information for 4-AGGGTGGCTGGTGTCW (Motif 6)

C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
Reverse Opposite:
G C A T C T A G C G T A A T G C C G T A G T A C G T A C C G T A A T C G T G A C A G T C C G T A A G T C A G T C G T A C C G A T
p-value:1e-14
log p-value:-3.262e+01
Information Content per bp:1.769
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.8 +/- 15.0bp
Average Position of motif in Background26.0 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGGGTGGCTGGTGTCW
--CGTGGGTGGTCC--
 C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
A C G T A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGGTGGCTGGTGTCW
GGNGCGNCTGTTNNN-
 C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T A C G T

RREB1/MA0073.1/Jaspar

Match Rank:3
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------AGGGTGGCTGGTGTCW
NGGGGGGGGGTGGTTTGGGG--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
A C G T A T C G C A T G A C T G C A T G A C T G A C T G A C T G A C T G A C T G A C G T A C T G C A T G A C G T A C G T A C G T A C T G A C T G A C T G A C T G A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGGGTGGCTGGTGTCW
----TGACAGGTGTCA
 C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
A C G T A C G T A C G T A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A

PKNOX1/MA0782.1/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AGGGTGGCTGGTGTCW
----TGACAGGTGTCA
 C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
A C G T A C G T A C G T A C G T G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGGGTGGCTGGTGTCW
NNTNNTGTCTGGNNTNG
 A C G T C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGGGTGGCTGGTGTCW
-VBSYGTCTGG-----
 C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:AGGGTGGCTGGTGTCW
---TWGTCTGV-----
 C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:forward strand
Alignment:AGGGTGGCTGGTGTCW
----TGACAGCTGTCA
 C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AGGGTGGCTGGTGTCW
---CTGTCTGG-----
 C G T A C A T G A C T G A C T G A C G T C T A G A C T G A T G C A C G T A C T G A C T G A C G T A T C G G C A T A G T C C G T A
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T