Information for 2-AAVCCTTATGAATGTA (Motif 3)

C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A
Reverse Opposite:
C A G T C G T A A G T C C G T A A G C T A G C T A G T C C G T A C G A T C G T A C T G A A C T G C T A G A C G T A C G T A C G T
p-value:1e-25
log p-value:-5.767e+01
Information Content per bp:1.811
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.8 +/- 31.8bp
Average Position of motif in Background44.2 +/- 12.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAVCCTTATGAATGTA---
--NTTNTATGAATGTGNNC
 C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A A C G T A C G T A C G T
A C G T A C G T G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AAVCCTTATGAATGTA
-NNTNTCATGAATGT-
 C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A
A C G T A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T

PB0198.1_Zfp128_2/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AAVCCTTATGAATGTA--
----NNTATANATATACN
 C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A C T G G C A T C T G A G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G T A C G T C A

HLTF/MA0109.1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAVCCTTATGAATGTA
-AACCTTATAT-----
 C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A
A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.55
Offset:7
Orientation:forward strand
Alignment:AAVCCTTATGAATGTA-
-------ATGMATATDC
 C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

LIN54/MA0619.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AAVCCTTATGAATGTA
-----ATTTGAATT--
 C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:AAVCCTTATGAATGTA----
----ACTATGAATGAATGAT
 C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:AAVCCTTATGAATGTA---
----CTCATGAATATTCAT
 C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AAVCCTTATGAATGTA
---CCYMATAAAA---
 C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A
A C G T A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AAVCCTTATGAATGTA
ATGCATWATGCATRW-
 C G T A G T C A T C G A A G T C A G T C A G C T A C G T C G T A A C G T T C A G T C G A C T G A A C G T C T A G A C G T G T C A
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T A C G T