Information for 4-AGAAACCCTAYRAATG (Motif 3)

C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G
Reverse Opposite:
A G T C C T G A A G C T A C G T A G T C C T G A G A C T C G T A C A T G T C A G C T A G G A C T A G C T A C G T G A T C C G A T
p-value:1e-444
log p-value:-1.024e+03
Information Content per bp:1.765
Number of Target Sequences with motif227.0
Percentage of Target Sequences with motif38.80%
Number of Background Sequences with motif91.9
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets52.6 +/- 27.9bp
Average Position of motif in Background46.0 +/- 43.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX21/MA0866.1/Jaspar

Match Rank:1
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGAAACCCTAYRAATG--
---AACACTACCATTGTT
 C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G A C G T A C G T
A C G T A C G T A C G T T C G A G T C A G A T C G C T A G T A C A G C T C T G A G T A C G T A C G T C A A G C T A G C T T A C G A G C T G A C T

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:AGAAACCCTAYRAATG-----
----NTTNTATGAATGTGNNC
 C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGAAACCCTAYRAATG
ACTGAAACCA--------
 A C G T A C G T C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0034.1_Irf4_1/Jaspar

Match Rank:4
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----AGAAACCCTAYRAATG
CGTATCGAAACCAAA------
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:5
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-AGAAACCCTAYRAATG
AATAAACAATN------
 A C G T C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G
G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:6
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AGAAACCCTAYRAATG
-GWAAYHTGAKMC---
 C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T A C G T A C G T

PB0036.1_Irf6_1/Jaspar

Match Rank:7
Score:0.48
Offset:-5
Orientation:forward strand
Alignment:-----AGAAACCCTAYRAATG
CTGATCGAAACCAAAGT----
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.48
Offset:2
Orientation:forward strand
Alignment:AGAAACCCTAYRAATG
--AAACCACANN----
 C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G
A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:9
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-AGAAACCCTAYRAATG
GCAAAACATTACTA---
 A C G T C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A A C G T A C G T A C G T

Sox1/MA0870.1/Jaspar

Match Rank:10
Score:0.47
Offset:3
Orientation:forward strand
Alignment:AGAAACCCTAYRAATG--
---AACAATAACATTGTT
 C G T A C T A G C G T A C T G A C T G A G A T C A G T C G T A C G A C T C G T A A G C T T C A G T G C A T C G A A G C T C T A G A C G T A C G T
A C G T A C G T A C G T T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T