Information for 14-TGACHTCTGGCTR (Motif 12)

C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G
Reverse Opposite:
A G T C C G T A A C T G A G T C T G A C C T G A A T C G C G T A C T G A C A T G C A G T A G T C G C T A
p-value:1e-32
log p-value:-7.524e+01
Information Content per bp:1.620
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif7.01%
Number of Background Sequences with motif221.4
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets47.6 +/- 21.3bp
Average Position of motif in Background48.6 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGACHTCTGGCTR
CTGACCTTTG----
 A C G T C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGACHTCTGGCTR
TGATTTATGGCC-
 C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGACHTCTGGCTR
NTGCCCTTGGGCGN
 A C G T C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TGACHTCTGGCTR
CNNTTGACCTTTG----
 A C G T A C G T A C G T A C G T C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGACHTCTGGCTR----
BTGACCTCTNNHTGACCY
 A C G T C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G A C G T A C G T A C G T A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TGACHTCTGGCTR
NNNGTGACCTTTGNNN-
 A C G T A C G T A C G T A C G T C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGACHTCTGGCTR
NTGATTTATGGCC-
 A C G T C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGACHTCTGGCTR
TTGACTTTT-----
 A C G T C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGACHTCTGGCTR
TGACCYCT-----
 C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGACHTCTGGCTR
NNNNTGACCTTTNNNN-
 A C G T A C G T A C G T A C G T C G A T A C T G G T C A G T A C G A C T G C A T A T G C A G C T A C T G T C A G G T A C G C A T C T A G
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A A C G T