Information for 5-AGTCCATGCGAAC (Motif 4)

C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C
Reverse Opposite:
A C T G A C G T A C G T G T A C A C T G A G T C C T G A A G C T A C T G A C T G C G T A A G T C A C G T
p-value:1e-16
log p-value:-3.777e+01
Information Content per bp:1.855
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.9 +/- 28.0bp
Average Position of motif in Background77.2 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------AGTCCATGCGAAC
GGCAAAAGTCCAATAA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T A C G T A C G T A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGTCCATGCGAAC
GCATTCCAGN-----
 A C G T A C G T C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C
C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGTCCATGCGAAC
GAGSCCGAGC----
 A C G T C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T A C G T

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGTCCATGCGAAC
--KCCACGTGAC-
 C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C
A C G T A C G T A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C A C G T

USF1/MA0093.2/Jaspar

Match Rank:5
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGTCCATGCGAAC
--GCCACGTGACC
 C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C
A C G T A C G T T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGTCCATGCGAAC-----
--ACTATGCCAACCTACC
 C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PB0147.1_Max_2/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGTCCATGCGAAC-
GTGCCACGCGACTG
 C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:AGTCCATGCGAAC-
----CSTGGGAAAD
 C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C A C G T
A C G T A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AGTCCATGCGAAC
-TTGCGTGCVA--
 C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AGTCCATGCGAAC-
TTGCCATGGCAACC
 C G T A A C T G A C G T A G T C A G T C C T G A A G C T A C T G G T A C A C T G C G T A G T C A G T A C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C