Information for 13-AAGTCAGTCC (Motif 39)

C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A G T C A C G T A C T G C G T A A G T C A C G T A C G T
p-value:1e-6
log p-value:-1.432e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.3 +/- 24.3bp
Average Position of motif in Background62.8 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AAGTCAGTCC
AAAAGTCAA---
 A C G T A C G T C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AAGTCAGTCC-
AGGGAAGTCATTTCT
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

POL002.1_INR/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AAGTCAGTCC-
---TCAGTCTT
 C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAGTCAGTCC
ACGTCA----
 C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C
C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGTCAGTCC--
CNGTCACGCCAC
 C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C A C G T A C G T
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

PB0171.1_Sox18_2/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------AAGTCAGTCC
NNNNTGAATTCANNNC
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AAGTCAGTCC
ATCAAGGTCA----
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AAGTCAGTCC
-AGTCACGC-
 C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAGTCAGTCC-
SCTGTCAVTCAV
 A C G T C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAGTCAGTCC-
NCTGTCAATCAN
 A C G T C G T A C G T A A C T G A C G T A G T C C G T A A C T G A C G T A G T C A G T C A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A