Information for 4-RGGCTGSAAAGRGAAA (Motif 3)

T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A
Reverse Opposite:
C G A T A C G T A C G T A G T C A G C T A G T C C A G T A G C T A C G T A T G C A T G C G T C A A C T G A T G C A G T C A G C T
p-value:1e-19
log p-value:-4.403e+01
Information Content per bp:1.754
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.8 +/- 21.2bp
Average Position of motif in Background32.8 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

IRF2/MA0051.1/Jaspar

Match Rank:1
Score:0.61
Offset:5
Orientation:forward strand
Alignment:RGGCTGSAAAGRGAAA-------
-----GGAAAGCGAAACCAAAAC
 T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RGGCTGSAAAGRGAAA----
NNCCTGNAAAAAAAAAAAAA
 T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RGGCTGSAAAGRGAAA----
NNCCTGNAAAAAAAAAAAAA
 T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:RGGCTGSAAAGRGAAA--
------GAAAGTGAAAGT
 T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:5
Score:0.58
Offset:6
Orientation:forward strand
Alignment:RGGCTGSAAAGRGAAA--
------GAAAGTGAAAGT
 T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T G A C G T A C G T A T A C G G C A T C T A G C T G A C G T A C G T A T A C G G A C T

E2F4/MA0470.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RGGCTGSAAAGRGAAA
GGGCGGGAAGG-----
 T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A
A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G A C G T A C G T A C G T A C G T A C G T

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:RGGCTGSAAAGRGAAA--
------GAAACTGAAACT
 T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C T G A G T C A C G T A A T G C G A C T A T C G G T C A C T G A C T G A T A G C G A C T

PRDM1/MA0508.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:RGGCTGSAAAGRGAAA----
-----AGAAAGTGAAAGTGA
 T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--RGGCTGSAAAGRGAAA
BTKGGCGGGAAA------
 A C G T A C G T T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A
A C T G A C G T C A T G A T C G A T C G T G A C A C T G A T C G A T C G T G C A C T G A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

E2F6/MA0471.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RGGCTGSAAAGRGAAA
GGGCGGGAAGG-----
 T C G A A C T G A T C G A G T C C A G T A T C G T A C G C G T A C T G A G C T A C T A G C T G A A C T G G T C A C G T A C G T A
C T A G T C A G A C T G G T A C C T A G A C T G T A C G C G T A C T G A T C A G T C A G A C G T A C G T A C G T A C G T A C G T