Information for 9-AATRGAGTTT (Motif 28)

C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T
Reverse Opposite:
G T C A C T G A C G T A A G T C A C G T G A T C A G C T C G T A A C G T A C G T
p-value:1e-7
log p-value:-1.827e+01
Information Content per bp:1.817
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif83.1
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets40.6 +/- 32.7bp
Average Position of motif in Background46.5 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0135.1_Hoxa3_2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AATRGAGTTT
CCTTAATNGNTTTT
 A C G T A C G T A C G T A C G T C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AATRGAGTTT----
NNATTGGACTTTNGNN
 A C G T A C G T C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T A C G T A C G T A C G T A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AATRGAGTTT
TAATTGATTA-
 A C G T C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T
C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AATRGAGTTT--
--TTRAGTGSYK
 C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AATRGAGTTT----
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

PAX7/MA0680.1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AATRGAGTTT
TAATCGATTA-
 A C G T C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T
C G A T C T G A C G T A G A C T A G T C T C A G C T G A A C G T A C G T G C T A A C G T

PAX3/MA0780.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AATRGAGTTT
TAATCGATTA-
 A C G T C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T
C G A T C T G A T C G A G A C T A G T C T C A G T C G A C A G T A G C T G C T A A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AATRGAGTTT-
-BTBRAGTGSN
 C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T A C G T
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AATRGAGTTT-
-CTYRAGTGSY
 C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T A C G T
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AATRGAGTTT--
--TTGAGTGSTT
 C G T A G T C A A C G T C T G A C T A G C G T A A C T G A C G T G A C T A C G T A C G T A C G T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T