Information for 2-RCCAWCTWGTGRA (Motif 3)

C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A
Reverse Opposite:
A C G T A G T C A G T C C G T A A G T C C G T A C G T A A C T G C G T A A C G T A C T G A C T G A G T C
p-value:1e-14
log p-value:-3.405e+01
Information Content per bp:1.872
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.3 +/- 23.4bp
Average Position of motif in Background39.9 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----RCCAWCTWGTGRA--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----RCCAWCTWGTGRA--
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---RCCAWCTWGTGRA
GCNGCCATCTTG----
 A C G T A C G T A C G T C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------RCCAWCTWGTGRA
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

YY1(Zf)/Promoter/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---RCCAWCTWGTGRA
GCCGCCATCTTG----
 A C G T A C G T A C G T C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:RCCAWCTWGTGRA
GCCATCTGTT---
 C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--RCCAWCTWGTGRA
CGACCATCTGTT---
 A C G T A C G T C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A
G T A C T A C G C T G A G T A C A T G C C G T A A C G T G T A C A C G T A C T G A C G T G A C T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RCCAWCTWGTGRA
ACCATCTGTT---
 C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:RCCAWCTWGTGRA-
--------GTGGAT
 C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RCCAWCTWGTGRA
GCCAGCTGBTNB-
 C T A G A G T C A G T C C G T A C G A T A G T C A C G T C G A T A C T G A C G T A C T G T C A G G T C A
T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C A C G T