Information for 6-GGGCCATCTCAGCCAG (Motif 20)

C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A G T C C G A T A C T G C T G A A C T G C G T A A C G T A C T G A C T G A G T C A G T C A G T C
p-value:1e-9
log p-value:-2.146e+01
Information Content per bp:1.852
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.4 +/- 13.9bp
Average Position of motif in Background36.2 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.55
Offset:10
Orientation:reverse strand
Alignment:GGGCCATCTCAGCCAG
----------TGCCAA
 C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGGCCATCTCAGCCAG
---AAATCACTGC---
 C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:GGGCCATCTCAGCCAG---
---------ATGCCAGACN
 C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GGGCCATCTCAGCCAG-
--------CGTGCCAAG
 C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GGGCCATCTCAGCCAG
------DCTCAGCAGG
 C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GGGCCATCTCAGCCAG---
----CCACACAGCAGGAGA
 C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:forward strand
Alignment:GGGCCATCTCAGCCAG---
----CCACACAGCAGGAGA
 C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.51
Offset:9
Orientation:forward strand
Alignment:GGGCCATCTCAGCCAG-
---------TTGCCAAG
 C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GGGCCATCTCAGCCAG
---AAATCACAGCA--
 C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G
A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:10
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:GGGCCATCTCAGCCAG-----
------TCCCAGMCRAGCCCC
 C T A G A C T G T A C G T A G C A G T C G T C A A C G T A G T C A G C T A G T C C G T A A C T G A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C