Information for 1-SGCCGCCATYTTK (Motif 1)

A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G
Reverse Opposite:
T G A C C T G A C G T A T C A G C G T A A C G T A C T G A C T G G T A C A C T G T A C G G T A C T A G C
p-value:1e-270
log p-value:-6.236e+02
Information Content per bp:1.638
Number of Target Sequences with motif339.0
Percentage of Target Sequences with motif41.39%
Number of Background Sequences with motif1499.5
Percentage of Background Sequences with motif3.27%
Average Position of motif in Targets52.4 +/- 17.8bp
Average Position of motif in Background51.7 +/- 36.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:SGCCGCCATYTTK
-GCNGCCATCTTG
 A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:SGCCGCCATYTTK
-GCCGCCATCTTG
 A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:SGCCGCCATYTTK
GTCCGCCATTA--
 A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----SGCCGCCATYTTK
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:SGCCGCCATYTTK
---TGCCAA----
 A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:SGCCGCCATYTTK
---GGCCATTAAC
 A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G
A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:SGCCGCCATYTTK
-CGTGCCAAG---
 A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.64
Offset:4
Orientation:forward strand
Alignment:SGCCGCCATYTTK-
----GCCATCTGTT
 A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G A C G T
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

E2F2/MA0864.1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----SGCCGCCATYTTK
AAAATGGCGCCATTTT-
 A C G T A C G T A C G T A C G T A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T A C G T

E2F3/MA0469.2/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----SGCCGCCATYTTK
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T A C G T A C G T A T C G C A T G A T G C T G A C C A T G G T A C A G T C G T C A A C G T A G T C G C A T A G C T A C T G
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T