Information for 4-GCAGCCATATTTGTCA (Motif 6)

C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
Reverse Opposite:
A C G T A T C G C T G A A T G C C G T A C T G A C G T A A G C T C G T A A G C T A C T G A C T G A G T C A C G T A T C G G T A C
p-value:1e-13
log p-value:-3.186e+01
Information Content per bp:1.802
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 31.7bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCAGCCATATTTGTCA
GCNGCCATCTTG----
 C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GCAGCCATATTTGTCA
GCCGCCATCTTG----
 C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCAGCCATATTTGTCA
GTCCGCCATTA------
 A C G T C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCAGCCATATTTGTCA
--TTCCATATATGGAA
 C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
A C G T A C G T G C A T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A G C A T C T A G C A T G G C A T G T C A

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GCAGCCATATTTGTCA
----CCATATATGGNA
 C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
A C G T A C G T A C G T A C G T A T G C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G C A T G T G A C G T C A

Twist2/MA0633.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCAGCCATATTTGTCA
---ACCATATGTT---
 C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
A C G T A C G T A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T A C G T

E2F3/MA0469.2/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GCAGCCATATTTGTCA
AAAAATGGCGCCATTTTT----
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T A C G T A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GCAGCCATATTTGTCA
----CCATATATGG--
 C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
A C G T A C G T A C G T A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G A C G T A C G T

NEUROD2/MA0668.1/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GCAGCCATATTTGTCA
---GCCATATGGT---
 C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
A C G T A C G T A C G T T C A G T G A C A T G C C T G A A G C T T G C A A G C T A C T G A C T G G A C T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCCATATTTGTCA
NNTNNCAATATTAG---
 A C G T C A T G A T G C G T C A A C T G A G T C A G T C C T G A A C G T C T G A A C G T A G C T C G A T A T C G A G C T T A G C C G T A
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T