Information for 14-RGCYRASSAAKMAAWA (Motif 23)

C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A
Reverse Opposite:
A C G T C G A T A C G T A C G T A C G T G T C A A C G T A C G T A T C G A T C G A C G T A G C T C T G A A C T G A G T C G A C T
p-value:1e-8
log p-value:-2.003e+01
Information Content per bp:1.810
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.0 +/- 16.8bp
Average Position of motif in Background52.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.63
Offset:6
Orientation:forward strand
Alignment:RGCYRASSAAKMAAWA
------CCAATAAAAA
 C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:RGCYRASSAAKMAAWA---
---AACCCAATAAAATTCG
 C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.62
Offset:6
Orientation:forward strand
Alignment:RGCYRASSAAKMAAWA
------CCAATAAAAC
 C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.61
Offset:6
Orientation:forward strand
Alignment:RGCYRASSAAKMAAWA
------CCAATAAAAA
 C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:RGCYRASSAAKMAAWA
------GCAATAAAAA
 C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RGCYRASSAAKMAAWA---
---CTACCAATAAAATTCT
 C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:RGCYRASSAAKMAAWA---
---AGAGCCATAAAATTCG
 C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:RGCYRASSAAKMAAWA
----AAGCCATAAAA-
 C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:RGCYRASSAAKMAAWA
-----GGTAATAAAAA
 C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:RGCYRASSAAKMAAWA
-----NCYAATAAAA-
 C T G A A C T G A G T C A G C T C T G A C G T A A T G C A T G C C G T A C G T A A C G T G T C A C G T A C G T A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T