Information for 7-TGTAAGGTCAACCAGA (Motif 19)

C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A
Reverse Opposite:
A G C T A T G C C A G T A C T G A C T G C A G T C A G T A C T G C G T A A G T C A G T C C G A T A C G T G T C A G T A C G C T A
p-value:1e-9
log p-value:-2.222e+01
Information Content per bp:1.696
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.2 +/- 27.4bp
Average Position of motif in Background71.6 +/- 11.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TGTAAGGTCAACCAGA
--TRAGGTCA------
 C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TGTAAGGTCAACCAGA
---AAGGTCAC-----
 C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TGTAAGGTCAACCAGA
----AGGTCA------
 C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TGTAAGGTCAACCAGA---
----AGGTCACCCTGACCT
 C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGTAAGGTCAACCAGA
-TCAAGGTCAN-----
 C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TGTAAGGTCAACCAGA
-TCAAGGTCAT-----
 C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A
A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTAAGGTCAACCAGA
ATCAAGGTCA------
 C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGTAAGGTCAACCAGA
TCTCAAAGGTCACGAG--
 A C G T A C G T C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:forward strand
Alignment:TGTAAGGTCAACCAGA--
---NAGGTCACNNTGACC
 C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A A C G T A C G T
A C G T A C G T A C G T T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGTAAGGTCAACCAGA
TCTCAAAGGTCACCTG--
 A C G T A C G T C A G T C A T G C A G T T C G A C G T A A C T G C T A G A C G T T A G C G T C A G T C A T G A C A G T C G C T A A T C G C T G A
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T