Information for 9-CTTGCTATCHAMC (Motif 16)

A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C
Reverse Opposite:
C A T G A C G T C G A T C A G T A C T G C T G A C G A T C G T A C T A G A G T C C T G A C G T A A T C G
p-value:1e-10
log p-value:-2.336e+01
Information Content per bp:1.702
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets68.5 +/- 18.0bp
Average Position of motif in Background45.5 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCTATCHAMC
NCCGTTGCTANGNGN-
 A C G T A C G T A C G T A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G A C G T

PB0155.1_Osr2_2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTTGCTATCHAMC--
ACTTGCTACCTACACC
 A C G T A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTTGCTATCHAMC--
ACATGCTACCTAATAC
 A C G T A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCTATCHAMC
NNCGTTGCTATGGNN-
 A C G T A C G T A C G T A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTTGCTATCHAMC-
KGTTGCTAGGMAACA
 A C G T A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------CTTGCTATCHAMC---
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CTTGCTATCHAMC
CTGTTGCTAGGS---
 A C G T A C G T A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T A C G T A C G T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTTGCTATCHAMC
--YSTTATCT---
 A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C
A C G T A C G T A G C T A T C G A G C T C G A T C T G A C G A T A T G C C G A T A C G T A C G T A C G T

GATA5/MA0766.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTTGCTATCHAMC
--TCTTATCT---
 A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C
A C G T A C G T A G C T A T G C G A C T C G A T C G T A A G C T A G T C C G A T A C G T A C G T A C G T

PH0166.1_Six6_2/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CTTGCTATCHAMC-
AATNTTGATACCCTATN
 A C G T A C G T A C G T A T G C C G A T A G C T C T A G A G T C A C G T C G T A A G C T T A G C G C T A C G T A T G C A G A T C A C G T
T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T