Information for 9-CASKCWRWGCTRATMW (Motif 8)

A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A
Reverse Opposite:
C G A T C A T G C G T A A C G T A G C T C T G A A C T G A G T C C G T A A G T C C G A T A C T G G T A C A T G C A C G T A C T G
p-value:1e-13
log p-value:-3.138e+01
Information Content per bp:1.777
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.8 +/- 28.1bp
Average Position of motif in Background55.6 +/- 20.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CASKCWRWGCTRATMW-
-----WATGCAAATGAG
 A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU3F4/MA0789.1/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CASKCWRWGCTRATMW
-----TATGCAAAT--
 A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A
A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CASKCWRWGCTRATMW-
-----TATGCWAATBAV
 A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PH0098.1_Lhx8/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CASKCWRWGCTRATMW-----
----CACCGCTAATTAGNNGN
 A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T

PH0045.1_Hoxa1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CASKCWRWGCTRATMW----
----CTGAGCTAATTACCGT
 A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

NRL/MA0842.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CASKCWRWGCTRATMW
---AATTTGCTGAC--
 A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A
A C G T A C G T A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CASKCWRWGCTRATMW-
CGAACAGTGCTCACTAT
 A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CASKCWRWGCTRATMW
-----TATGCAAAT--
 A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T

PH0094.1_Lhx4/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CASKCWRWGCTRATMW-----
----CAAAGCTAATTAGNTTN
 A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C T G C A G C T A T G C A T A C G A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A G C T G C A T C A G T G T C A

PH0097.1_Lhx6_2/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CASKCWRWGCTRATMW-----
----NNNCGCTAATTAGNNGA
 A G T C C G T A T A C G C A T G G T A C C G T A C T A G C G A T A C T G A G T C A G C T C T G A C G T A C G A T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A G C T A G A T C G T A C T C A G G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G C T C A T G A C T G C G T A