Information for 5-HVCCTGGCTTTCTVGA (Motif 4)

G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A
Reverse Opposite:
A C G T G T A C A G T C C G T A A T C G G T C A C G T A C G T A A C T G A T G C G A T C C T G A A C T G A C T G A T G C C A G T
p-value:1e-16
log p-value:-3.746e+01
Information Content per bp:1.754
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 23.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.56
Offset:7
Orientation:forward strand
Alignment:HVCCTGGCTTTCTVGA
-------CTTTGT---
 G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:HVCCTGGCTTTCTVGA
-----NGCTN------
 G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.53
Offset:3
Orientation:forward strand
Alignment:HVCCTGGCTTTCTVGA
---CAAGCTT------
 G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A
A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.51
Offset:6
Orientation:forward strand
Alignment:HVCCTGGCTTTCTVGA
------CCWTTGTYYB
 G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.50
Offset:0
Orientation:forward strand
Alignment:HVCCTGGCTTTCTVGA
GGTCTGGCAT------
 G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

BCL6B/MA0731.1/Jaspar

Match Rank:6
Score:0.50
Offset:5
Orientation:forward strand
Alignment:HVCCTGGCTTTCTVGA------
-----TGCTTTCTAGGAATTCA
 G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C T A G A G T C A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C T G C T G A C G T A A G C T A G C T T G A C T G C A

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:HVCCTGGCTTTCTVGA---
---ANTCCTTTGTCTNNNN
 G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.49
Offset:6
Orientation:forward strand
Alignment:HVCCTGGCTTTCTVGA
------YCTTTGTTCC
 G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:HVCCTGGCTTTCTVGA
-----GGCGCGCT---
 G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A
A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.48
Offset:6
Orientation:forward strand
Alignment:HVCCTGGCTTTCTVGA
------CCWTTGTY--
 G T C A T A C G A G T C A G T C A G C T C T A G A T C G A G T C A C G T A C G T A C G T A T G C A C G T T C A G C A T G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T